Curriculum Vitae for Carsten O. Daub 

 

Name: Carsten Oliver Daub
Birth date: April 26th, 1972
Phone: +46852481224
E-mail: carsten.daub@ki.se
Web: daublab.org, KI website, KI group website 

Profile picture Carsten Daub

Education and professional training

Current employments and positions

Previous employments and positions

  • 2008-2012, Facility Director and Team Leader, LSA Bioinformatics Core Facility, Omics Science Center, RIKEN

  • 2009-2012, Deputy Director, Genome Network Analysis Support Facility (GeNAS), RIKEN

  • 2007-2012, Steering Group Member, Omics Science Center, RIKEN

  • 2007-2008, Team Leader Bioinformatics, Genomic Sciences Center, RIKEN

  • 2006-2007, Researcher, Genomic Sciences Center, RIKEN Yokohama Institute, Japan

Publication summary (March 2023)

  • Total number of peer-reviewed publications: 94, first author: 4, last author: 17

  • H-index: 49 (Google scholar)

  • Total number of citations: >16,500 (Google scholar)

Commissions of trust

  • MedBioInfo Doctoral School - University representative, since 2019

  • KI representative for the DDLS research training working group, since 2022

  • Data Driven Life Sciences (DDLS)/KI Group, since 2022 

  • Member of Steering Group for SciLifeLab Committee KI, since 2022

  • KI Kurs och program komitee – KPK, 2020-2022

  • PhD examination committee member and chair (multiple), KI

  • PhD Admission Board member, Department of Biosciences and Nutrition, KI

  • PhD thesis opponent, Royal Institute of Technology, Stockholm

  • FANTOM Consortium management group member since 2009

  • DANIO-CODE Consortium management group since 2014

  • DoGA Consortium management group since 2018

  • PhD student mentor at Karolinska Institutet

Evaluation of others work

  • Editorial Board member of Scientific Data

  • Reviewer for the following journals: Nature Methods, Nature Scientific Data, Nature Biotechnology, Genome Biology, Genome Research, Genome Medicine, Bioinformatics, Genomics, BMC Bioinformatics

  • Reviewer for The Danish Council for Strategic Research, Swiss Science Foundation

Organization of scientific meetings

  • 2014-2020 RIKEN – Karolinska Institutet – SciLifeLab Joint Symposium series (yearly)

  • 2011 and 2012, RIKEN organizer of the SciLifeLab – RIKEN Yokohama Joint Seminars at Nobel Forum

  • 2012, Scientific organizer of the FANTOM5 Consortium Meeting at RIKEN Yokohama

  • 2011, Program committee member and session Chair of The 11th Society for Bioinformatics in Northern Europe (SocBiN) Conference, Helsinki, Finland

Formal training in people management

  • Organizational and social work environment, 2 days, 2019

  • Psykosociala arbetsmiljöfrågor kopplat till chefens ansvar, 2 days, 2015

  • Salary review dialogue related to manager responsibilities, 1 day, 2014

  • Project leadership for research leaders, 5 days, 2012

Research grants obtained in open competition

As principal applicant

  • Strategic Research Programme in Diabetes, Principle Investigator Grant, Title: “The atlas of insulin response genes and gene regulation in human adipose tissue”, 1,000,000 SEK, 2018-2020.

  • King Abdulaziz City for Science and Technology (KACST) Grant, Title: “Molecular Pathology for Cancer”, 120,000 US dollar (plus 1 PhD student for 4 years), 2019-2020

  • NovoNordisk-KI postdoc fellow, Title: “Elucidating the molecular mechanisms behind impaired insulin-induced transcriptional regulation in human adipose tissue”, 2,600,000 SEK for 2018-2020. Karolinska Institutet Senior Research Fellow: 6,000,000 SEK for 2016-2020.

  • KI Doktorand, Title: “Gene regulatory basis of insulin resistance in human fat tissue”, 1,080,000 SEK for 2014-2017.

  • Strategic Research Programme (SRP) in Diabetes, Principle Investigator Grant: 1,000,000 SEK (2018-2020)

  • Karolinska Institutet Senior Research Fellow: 6 million SEK (2016-2020)

  • Novo Nordisk Foundation: 330,000 SEK for 2014 (1 year)

  • Startup funding at Department of Biosciences and Nutrition and SciLifeLab: 4,000,000 SEK for 2012-2013 (2 years)

  • RIKEN IPA PhD student grant: ca. 2,000,000 SEK, 2009-2012 (4 years)

As co-applicant

  • Knut och Alice Wallenbergs Stiftelse (KAW), Project: “Tissue-crosstalk and metabolic regulation of type 2 diabetes”, main applicant: Juleen Zierath (KI), total amount: 18,000,000 SEK for 2019-2021; 800,000 SEK to Carsten Daub.

  • Swedish Foundation for Strategic Research (SSF), Project: “Mikroskopibaserad systembiologisk analys av cellmigration”, main applicant: Staffan Strömblad (KI), total amount: 35,000,000 SEK for 2017-2022; 2,400,000 SEK to Carsten Daub

  • Jane and Aatos Erkko Foundation, Project: “Functional Annotation of the Dog Genome”, main applicant: Hannes Lohi (University Helsinki), total amount: 2,000,000 EUR for 2016-2020; 500,000 EUR to Carsten Daub

  • ZENCODE-ITN, EU Marie-Curie Initial Training Network, Project: “ZENCODE Initial Training Network”, main applicant: Ferenc Muller (University Birmingham), total amount: 3,700,000 EUR for 2015-2019; 600,000 EUR to Carsten Daub

Supervision doctoral students and postdocs

Ongoing

  • Since 2018, Rasha Fahad, PhD student

  • Since 2015, Tahmina Akhter, PhD student

Completed

  • 2015-2022, Matthias Hörtenhuber, PhD student

  • 2015-2021, Abdul Kadir Mukarram, PhD student

  • 2015-2021, Enrichetta Mileti, PhD student

  • 2018-2021, Kelvin Kwok, postdoc

  • 2014-2019, Niyaz Yoosuf, postdoc

  • 2012-2014, Olga Hrydziuszko, postdoc

  • 2012-2014, Nancy Yu, postdoc

  • 2012-2013, Andrew Kwon, postdoc, RIKEN Yokohama

  • 2011-2013, Jordan Ramilowski, postdoc, RIKEN Yokohama

  • 2009-2011, Max Burroughs, postdoc, RIKEN Yokohama

  • 2009-2013 Morana Vitezic, Karolinska Institutet PhD student, working at RIKEN Yokohama, financed by RIKEN IPA program